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    1 Abecasis, Ana B, Yunpeng Wang, Pieter Libin, Stijn Imbrechts, Tulio de Oliveira, Ricardo J Camacho, and Anne-Mieke Vandamme. "Comparative performance of the REGA subtyping tool version 2 versus version 1." Infect. Genet. Evol. 10, no. 3 (2010): 380-385.
    2 Alcantara, Luiz C J, Tulio de Oliveira, Michelle Gordon, Oliver Pybus, Rita Elizabeth Mascarenhas, Magda O Seixas, Marilda Gonçalves, Carol Hlela, Sharon Cassol, and Bernardo Galvão-Castro. "Tracing the origin of Brazilian HTLV-1 as determined by analysis of host and viral genes." AIDS 20, no. 5 (2006): 780-782.
    3 Alcantara, Luiz Carlos Junior, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, and Tulio de Oliveira. "A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences." Nucleic Acids Res. 37, no. Web Server issue (2009).
    4 da Silva, Zacarias J, Jens Nielsen, Andreas Andersen, Inés Oliveira, Francisco Dias, Amabélia Rodrigues, Birgitta Holmgren, Sören Andersson, and Peter Aaby. "Decline in human T-cell lymphotropic virus-1 prevalence in urban areas of Bissau, Guinea-Bissau: exploring the association with HIV infections." AIDS 23, no. 5 (2009): 637-639.
    5 da Silva, Zacarias J, Inês Oliveira, Andreas Andersen, Francisco Dias, Amabélia Rodrigues, Birgitta Holmgren, Sören Andersson, and Peter Aaby. "Changes in prevalence and incidence of HIV-1, HIV-2 and dual infections in urban areas of Bissau, Guinea-Bissau: is HIV-2 disappearing?." AIDS 22, no. 10 (2008): 1195-1202.
    6 De Oliveira, T, R Miller, M Tarin, and S Cassol. "An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences." Bioinformatics 19, no. 1 (2003): 153-154.
    7 de Oliveira, Tulio, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joe Snoeck, Estrelita Janse van Rensburg, Annemarie M J Wensing, David A van de Vijver, Charles A Boucher, Ricardo Camacho, and Anne-Mieke Vandamme. "An automated genotyping system for analysis of HIV-1 and other microbial sequences." Bioinformatics 21, no. 19 (2005): 3797-3800.
    8 de Oliveira, Tulio, Susan Engelbrecht, Estrelita Janse van Rensburg, Michelle Gordon, Karen Bishop, Jan zur Megede, Susan W Barnett, and Sharon Cassol. "Variability at human immunodeficiency virus type 1 subtype C protease cleavage sites: an indication of viral fitness?." J. Virol. 77, no. 17 (2003): 9422-9430.
    9 de Oliveira, Tulio, Marco Salemi, Michelle Gordon, Anne-Mieke Vandamme, Estrelita Janse van Rensburg, Susan Engelbrecht, Hoosen M Coovadia, and Sharon Cassol. "Mapping sites of positive selection and amino acid diversification in the HIV genome: an alternative approach to vaccine design?." Genetics 167, no. 3 (2004): 1047-1058.
    10 de Oliveira, Tulio, Robert W Shafer, and Christopher Seebregts. "Public database for HIV drug resistance in southern Africa." Nature 464, no. 7289 (2010).
    11 Doherty, Ryan S, Tulio De Oliveira, Chris Seebregts, Sivapragashini Danaviah, Michelle Gordon, and Sharon Cassol. "BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools." Retrovirology (2005).
    12 Gomes, V F, C Wejse, I Oliveira, A Andersen, F J Vieira, L J Carlos, C S Vieira, P Aaby, and P Gustafson. "Adherence to isoniazid preventive therapy in children exposed to tuberculosis: a prospective study from Guinea-Bissau." Int. J. Tuberc. Lung Dis. 15, no. 12 (2011): 1637-1643.
    13 Gomes, Victor F, Andreas Andersen, Christian Wejse, Ines Oliveira, Fina J Vieira, Luis Carlos Joaquim, Cesaltina S Vieira, Peter Aaby, and Per Gustafson. "Impact of tuberculosis exposure at home on mortality in children under 5 years of age in Guinea-Bissau." Thorax 66, no. 2 (2011): 163-167.
    14 Gomes, Victor Francisco, Andreas Andersen, Grethe Lemvik, Christian Wejse, Ines Oliveira, Fina J Vieira, Luis José Carlos, Cesaltina da Silva Vieira, Peter Aaby, and Per Gustafson. "Impact of isoniazid preventive therapy on mortality among children less than 5 years old following exposure to tuberculosis at home in Guinea-Bissau: a prospective cohort study." BMJ Open 3, no. 3 (2013).
    15 Gordon, M, T De Oliveira, K Bishop, H M Coovadia, L Madurai, S Engelbrecht, E Janse van Rensburg, A Mosam, A Smith, and S Cassol. "Molecular characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategies." J. Virol. 77, no. 4 (2003): 2587-2599.
    16 Lamers, Susanna L, Marco Salemi, Derek C Galligan, Tulio de Oliveira, Gary B Fogel, Sara C Granier, Li Zhao, Joseph N Brown, Alanna Morris, Eliezer Masliah, and Michael S McGrath. "Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathology." PLoS ONE 4, no. 3 (2009).
    17 Manasa, Justen, David Katzenstein, Sharon Cassol, Marie-Louise Newell, and Tulio de Oliveira. "Primary drug resistance in South Africa: data from 10 years of surveys." AIDS Res. Hum. Retroviruses 28, no. 6 (2012): 558-565.
    18 Oliveira, Inés, Andreas Andersen, Alcino Furtado, Candida Medina, David da Silva, Zacarias J da Silva, Peter Aaby, Alex Lund Laursen, Christian Wejse, and Jesper Eugen-Olsen. "Assessment of simple risk markers for early mortality among HIV-infected patients in Guinea-Bissau: a cohort study." BMJ Open 2, no. 6 (2012).
    19 Oliveira, Inés, Søren Jensen-Fangel, David da Silva, Agostinho Ndumba, Candida Medina, Albino Nanadje, Dlama N Rasmussen, Frauke Rudolf, Christian Wejse, Zacarias J da Silva, Morten Sodemann, and Alex L Laursen. "Epidemic Stevens-Johnson syndrome in HIV patients in Guinea-Bissau: a side effect of the drug-supply policy?." AIDS 24, no. 5 (2010): 783-785.
    20 Porskrog, A, M Bjerregaard-Andersen, I Oliveira, L C Joaquím, C Camara, P L Andersen, P Rabna, P Aaby, and C Wejse. "Enhanced tuberculosis identification through 1-month follow-up of smear-negative tuberculosis suspects." Int. J. Tuberc. Lung Dis. 15, no. 4 (2011): 459-464.
    21 Rabna, Paulo, Andreas Andersen, Christian Wejse, Ines Oliveira, Victor Francisco Gomes, Maya Bonde Haaland, Peter Aaby, and Jesper Eugen-Olsen. "Urine suPAR levels compared with plasma suPAR levels as predictors of post-consultation mortality risk among individuals assumed to be TB-negative: a prospective cohort study." Inflammation 33, no. 6 (2010): 374-380.
    22 Rabna, Paulo, Andreas Andersen, Christian Wejse, Ines Oliveira, Victor Francisco Gomes, Maya Bonde Haaland, Peter Aaby, and Jesper Eugen-Olsen. "High mortality risk among individuals assumed to be TB-negative can be predicted using a simple test." Trop. Med. Int. Health 14, no. 9 (2009): 986-994.
    23 Rabna, Paulo, Andreas Andersen, Christian Wejse, Ines Oliveira, Victor Francisco Gomes, Maya Bonde Haaland, Peter Aaby, and Jesper Eugen-Olsen. "Utility of the plasma level of suPAR in monitoring risk of mortality during TB treatment." PLoS ONE (2012).
    24 Salemi, Marco, Tulio De Oliveira, Valerie Courgnaud, Vincent Moulton, Barbara Holland, Sharon Cassol, William M Switzer, and Anne-Mieke Vandamme. "Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses." J. Virol. 77, no. 13 (2003): 7202-7213.
    25 Salemi, Marco, Tulio de Oliveira, Marcelo A Soares, Oliver Pybus, Ana T Dumans, Anne-Mieke Vandamme, Amilcar Tanuri, Sharon Cassol, and Walter M Fitch. "Different epidemic potentials of the HIV-1B and C subtypes." J. Mol. Evol. 60, no. 5 (2005): 598-605.
    26 Soares, Marcelo A, Tulio De Oliveira, Rodrigo M Brindeiro, Ricardo S Diaz, Ester C Sabino, Luís Brigido, Ivone L Pires, Mariza G Morgado, Maria C Dantas, Draurio Barreira, Paulo R Teixeira, Sharon Cassol, and Amilcar Tanuri. "A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil." AIDS 17, no. 1 (2003): 11-21.
    27 zur Megede, Jan, Susan Engelbrecht, Tulio de Oliveira, Sharon Cassol, Thomas J Scriba, Estrelita Janse van Rensburg, and Susan W Barnett. "Novel evolutionary analyses of full-length HIV type 1 subtype C molecular clones from Cape Town, South Africa." AIDS Res. Hum. Retroviruses 18, no. 17 (2002): 1327-1332.